model.lasso: Run Lasso Models

In ravinpoudel/PhONA: PhONA provides a framework to select a testable and manageable number of OTUs/ASVs to support microbiome-based agriculture

Run Lasso Models

Description

This function takes in phyloseq object, association matix, p value matrix and create a combined OTU-OTU and OTU-Phenotype network. User can select model to define OTU-Phontype assocaition.

Usage

model.lasso(n, phenotype, odata)

Arguments

n	Number of iterations to run
phenotype	A variable representing phenotype- which is used a reponse variable for lasso regression
odata	Count data with rows as samples, and columns as features/OTUs/ASVs

Value

Features from lasso regression

ravinpoudel/PhONA documentation built on Jan. 30, 2023, 5:12 p.m.