model.linear: Run Linear Models
In ravinpoudel/PhONA: PhONA provides a framework to select a testable and manageable number of OTUs/ASVs to support microbiome-based agriculture
model.linear R Documentation
Run Linear Models
Description
This function takes in phyloseq object, association matix, p value matrix
and create a combined OTU-OTU and OTU-Phenotype network. User can select model to
define OTU-Phontype assocaition.
Usage
model.linear(n, phenotype, odata)
Arguments
n
Number of iterations to run
phenotype
A variable representing phenotype- which is used a reponse variable for linear regression
odata
Count data with rows as samples, and columns as features/OTUs/ASVs
Value
Features from linear regression
ravinpoudel/PhONA documentation built on Jan. 30, 2023, 5:12 p.m.
R Package Documentation
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| model.linear | R Documentation |
Run Linear Models
Description
This function takes in phyloseq object, association matix, p value matrix and create a combined OTU-OTU and OTU-Phenotype network. User can select model to define OTU-Phontype assocaition.
Usage
model.linear(n, phenotype, odata)
Arguments
n |
Number of iterations to run |
phenotype |
A variable representing phenotype- which is used a reponse variable for linear regression |
odata |
Count data with rows as samples, and columns as features/OTUs/ASVs |
Value
Features from linear regression
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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