summarizePhONA: Summarize graph object
In ravinpoudel/PhONA: PhONA provides a framework to select a testable and manageable number of OTUs/ASVs to support microbiome-based agriculture
summarizePhONA R Documentation
Summarize graph object
Description
This function takes in phyloseq object, association matix, p value matrix
and create a combined OTU-OTU and OTU-Phenotype network. User can select model to
define OTU-Phontype assocaition.
Usage
summarizePhONA(graph.object, roledf)
Arguments
x
A phyloseq object which combined OTU count, taxonomy and metadata
Value
A matrix of the infile
ravinpoudel/PhONA documentation built on Jan. 30, 2023, 5:12 p.m.
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| summarizePhONA | R Documentation |
Summarize graph object
Description
This function takes in phyloseq object, association matix, p value matrix and create a combined OTU-OTU and OTU-Phenotype network. User can select model to define OTU-Phontype assocaition.
Usage
summarizePhONA(graph.object, roledf)
Arguments
x |
A phyloseq object which combined OTU count, taxonomy and metadata |
Value
A matrix of the infile
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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