taxacolor: Function to assign color to the phyloseq object
In ravinpoudel/PhONA: PhONA provides a framework to select a testable and manageable number of OTUs/ASVs to support microbiome-based agriculture
taxacolor R Documentation
Function to assign color to the phyloseq object
Description
This function takes in phyloseq object, association matix, p value matrix
and create a combined OTU-OTU and OTU-Phenotype network. User can select model to
define OTU-Phontype assocaition.
Usage
taxacolor(phyobj, coloredby = "x")
Arguments
phyobj
A phyloseq object which combined OTU count, taxonomy and metadata
coloredby
Select a taxonomic rank for coloring nodes in the network diagram. Possible option: "Kingdom","Phylum","Class","Order","Family","Genus","Species"
Value
phyobj2 An updated phyloseq object with color information
ravinpoudel/PhONA documentation built on Jan. 30, 2023, 5:12 p.m.
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| taxacolor | R Documentation |
Function to assign color to the phyloseq object
Description
This function takes in phyloseq object, association matix, p value matrix and create a combined OTU-OTU and OTU-Phenotype network. User can select model to define OTU-Phontype assocaition.
Usage
taxacolor(phyobj, coloredby = "x")
Arguments
phyobj |
A phyloseq object which combined OTU count, taxonomy and metadata |
coloredby |
Select a taxonomic rank for coloring nodes in the network diagram. Possible option: "Kingdom","Phylum","Class","Order","Family","Genus","Species" |
Value
phyobj2 An updated phyloseq object with color information
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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