Files in rcastelo/GSVA
Gene Set Variation Analysis for Microarray and RNA-Seq Data
.Rbuildignore
.github/workflows/check-bioc.yml
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/AllClasses.R
R/AllGenerics.R
R/GSVA-package.R
R/GSVA-pkg-defunct.R
R/GSVA-pkg-deprecated.R
R/GsvaMethodParam.R
R/genesets.R
R/gsva-global.R
R/gsva.R
R/gsvaDelayedArray.R
R/gsvaNewAPI.R
R/gsvaParam.R
R/methods-ShinyApp.R
R/plage.R
R/plageParam.R
R/spatial.R
R/ssgsea.R
R/ssgseaParam.R
R/utils.R
R/zscore.R
R/zscoreParam.R
R/zzz.R
README.md
cleanup
inst/CITATION
inst/extdata/cache4vignette_leukemia_es.RData
inst/shinyApp/argumentsDataModule.R
inst/shinyApp/closeModule.R
inst/shinyApp/downloadModule.R
inst/shinyApp/geneSetsModule.R
inst/shinyApp/global.R
inst/shinyApp/matrixModule.R
inst/shinyApp/modalGSVAModule.R
inst/shinyApp/plot1_Module.R
inst/shinyApp/plot2_Module.R
inst/shinyApp/plot3_Module.R
inst/shinyApp/server.R
inst/shinyApp/ui.R
inst/shinyApp/www/GSVA.png
inst/shinyApp/www/style.css
inst/unitTests/test_gsvaCcode.R
inst/unitTests/test_gsvaRanks.R
inst/unitTests/test_inputdatacontainers.R
inst/unitTests/test_newAPI.R
inst/unitTests/test_params.R
inst/unitTests/test_sparse.R
inst/unitTests/test_ssgsea.R
man/GSVA-pkg-defunct.Rd
man/GSVA-pkg-deprecated.Rd
man/GsvaExprData-class.Rd
man/GsvaGeneSets-class.Rd
man/GsvaMethodParam-class.Rd
man/computeGeneSetsOverlap.Rd
man/deduplicateGeneSets.Rd
man/filterGeneSets.Rd
man/geneIdsToGeneSetCollection.Rd
man/geneSets.Rd
man/gsva-defunct.Rd
man/gsva.Rd
man/gsvaAnnotation.Rd
man/gsvaEnrichment.Rd
man/gsvaParam-class.Rd
man/gsvaRanks.Rd
man/guessGeneIdType.Rd
man/igsva.Rd
man/plageParam-class.Rd
man/readGMT.Rd
man/spatCor.Rd
man/ssgseaParam-class.Rd
man/zscoreParam-class.Rd
src/ecdfvals.c
src/kcdfvals.c
src/kernel_estimation.c
src/ks_test.c
src/register_cmethods.c
src/utils.c
tests/runTests.R
tests/test_gsva_newapi.R
tests/test_gsva_newapi.Rout.save
tests/test_plage_newapi.R
tests/test_plage_newapi.Rout.save
tests/test_ssgsea_newapi.R
tests/test_ssgsea_newapi.Rout.save
tests/test_zscore_newapi.R
tests/test_zscore_newapi.Rout.save
vignettes/GSVA.Rmd
vignettes/GSVA.bib
vignettes/methods.png
vignettes/webapp1.png
vignettes/webapp2.png
