Lacertid.varcov: Variance-covariance matrix for lacertids from Bauwens and...

In rdiaz02/PHYLOGR: Functions for Phylogenetically Based Statistical Analyses

Description

Phylogenetic variance-covariance matrix for 18 species of lacertids. It is based on Tree A of Bauwens and Diaz-Uriarte (1997).

Format

The Lacertid.varcov data frame has 18 rows and 18 columns, corresponding to each one of the 18 lacertidspecies; the matrix is the phylogenetic variance-covariance matrix between all 18 species; thus, each entry dij is the the sum of branch segment lengths that species i and j share in common.

Source

Bauwens, D., and Diaz-Uriarte, R. (1997) Covariation of life-history traits in lacertid lizards: a comparative study. The American Naturalist, 149, 91-11

See Also

SimulExample, Lacertid.Original

Examples

# a GLS fit
data(Lacertid.varcov)
data(Lacertid.Original)
ex.gls.phylog <-
phylog.gls.fit(Lacertid.Original$svl,Lacertid.Original$clutch.size,Lacertid.varcov)
ex.gls.phylog


## Not run: 
# This data can be obtained from the original dsc file as:
Lacertid.varcov <- read.phylog.matrix("ifsmi.dsc")
  
## End(Not run)

rdiaz02/PHYLOGR documentation built on April 22, 2020, 11:41 p.m.