plot.phylog.cancor: Plot a phylog.cancor object

In rdiaz02/PHYLOGR: Functions for Phylogenetically Based Statistical Analyses

Description

Plots histogram of the canonical correlations for simulated data as returned from a phylog.cancor object; with vertical bars indicates the values from the original (”real”) data (the one with sim.counter=0), and in parenthesis their 'correlation-wise' p-value (see summary.phylog.cancor).

Usage

## S3 method for class 'phylog.cancor'
plot(x, ...)

Arguments

x	an object of class phylog.cancor returned from a previous call to cancor.phylog.
...	other parameters to be passed to through to plotting functions (currently not used).

WARNING

These histograms are in the spirit of the 'correlation-wise' p-values returned from summary.phylog.cancor; see Details for summary.phylog.cancor.

Author(s)

Ramon Diaz-Uriarte and Theodore Garland, Jr.

References

Diaz-Uriarte, R., and Garland, T., Jr., in prep. PHYLOGR: an R package for the analysis of comparative data via Monte Carlo simulations and generalized least squares approaches.

See Also

cancor.phylog, summary.phylog.cancor

Examples

data(SimulExample)
ex1.cancor <- cancor.phylog(SimulExample[,c(1,2,3,4,5)],SimulExample[,c(1,2,6,7,8)])
ex1.cancor
summary(ex1.cancor)
par(mfrow=c(1,3))
plot(ex1.cancor)

rdiaz02/PHYLOGR documentation built on April 22, 2020, 11:41 p.m.