slimr_write: Write a slimr_script object to a text file

In rdinnager/slimrlang: Write SLiM Population Genetics Simulation Scripts in R

Description

Write a slimr_script object to a text file, which can be run in SLiM as a SLiM script

Usage

slimr_write(x, file, ...)

Arguments

x	slimr_script object to write to file
file	File path to write to
...	Further arguments to be passed to or from other objects

Value

Returns x, invisibly

Examples

slim_script(
   slim_block(initialize(),
          {
            initializeMutationRate(1e-7);
            initializeMutationType("m1", 0.5, "f", 0.0);
            initializeGenomicElementType("g1", m1, 1.0);
            initializeGenomicElement(g1, 0, 99999);
            initializeRecombinationRate(1e-8);
          }),
   slim_block(1,
          {
            sim.addSubpop("p1", 500);
          }),
   slim_block(10000,
          {
            sim.simulationFinished();
          })
) -> script
temp_file <- tempfile(fileext = ".txt")
slimr_write(script, temp_file)
readLines(temp_file)

rdinnager/slimrlang documentation built on June 20, 2020, 8:17 p.m.