getAssayDataOfStudies: Get specific assay data of one or more studies from the...
In rdshankar/RImmPort: RImmPort: Enabling Ready-for-analysis Immunology Research Data
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Get specific assay data of one or more studies from the ImmPort database
Usage
1
getAssayDataOfStudies(study_ids, assay_type)
Arguments
study_ids
List of study indentifiers
assay_type
Assay Type
Value
a list of 1) domain data of specicifc assay technology and 2) any supplemental domain data of the studies
Author(s)
Ravi Shankar
Examples
1
2
3
4
5
6
7
8
9
10
library(DBI)
library(sqldf)
studies_dir <- system.file("extdata", "ImmPortStudies", package = "RImmPort")
db_dir <- file.path(studies_dir, "Db")
sqlite_conn <- dbConnect(SQLite(), dbname=file.path(db_dir, "ImmPort.sqlite"))
setImmPortDataSource(sqlite_conn)
elispot_l <- getAssayDataOfStudies("SDY139", "ELISPOT")
if (length(elispot_l) > 0)
names(elispot_l)
head(elispot_l$zb_df)
rdshankar/RImmPort documentation built on May 27, 2019, 3:07 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) Examples
Description
Get specific assay data of one or more studies from the ImmPort database
Usage
1 | getAssayDataOfStudies(study_ids, assay_type)
|
Arguments
study_ids |
List of study indentifiers |
assay_type |
Assay Type |
Value
a list of 1) domain data of specicifc assay technology and 2) any supplemental domain data of the studies
Author(s)
Ravi Shankar
Examples
1 2 3 4 5 6 7 8 9 10 | library(DBI)
library(sqldf)
studies_dir <- system.file("extdata", "ImmPortStudies", package = "RImmPort")
db_dir <- file.path(studies_dir, "Db")
sqlite_conn <- dbConnect(SQLite(), dbname=file.path(db_dir, "ImmPort.sqlite"))
setImmPortDataSource(sqlite_conn)
elispot_l <- getAssayDataOfStudies("SDY139", "ELISPOT")
if (length(elispot_l) > 0)
names(elispot_l)
head(elispot_l$zb_df)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.