getEventsHierarchy: EventsHierarchy queries

In reactome/ReactomeContentService4R: Interface for the Reactome Content Service

EventsHierarchy queries

Description

Events (Pathways and Reactions) in Reactome are organized in a hierarchical structure for every species. By following all hasEvent relationships, this method retrieves the full event hierarchy for any given main species.

Usage

getEventsHierarchy(main.species)

Arguments

main.species

name or taxon/db id or abbreviation of main species in Reactome

Value

a nested dataframe containing full event hierarchy for a given main species

See Also

getSpecies to get the main species list

Other getContent: getEntities(), getOrthology(), getParticipants(), getPathways(), getPerson(), getSchemaClass(), getSpecies(), query()

Examples

## Not run: 
getEventsHierarchy("chicken")
getEventsHierarchy("XTR")

## End(Not run)

reactome/ReactomeContentService4R documentation built on May 1, 2023, 5:33 a.m.