searchQuery: Search query

In reactome/ReactomeContentService4R: Interface for the Reactome Content Service

Search query

Description

Search for Reactome objects by name or identifiers.

Usage

searchQuery(
  query,
  species = NULL,
  types = NULL,
  compartments = NULL,
  keywords = NULL,
  cluster = TRUE,
  range = NULL
)

Arguments

query	name or dbId or stId of a search term from any class
species	name or taxon id or dbId or abbreviation of species
types	type filter, such as "Protein", "Complex", "Reaction", etc
compartments	compartment filter, such as "cytosol", "plasma membrane", "nucleoplasm", etc
keywords	keyword filter, such as "binds", "phosphorylates", "transports", etc
cluster	cluster returned data or not
range	start row and the number of rows to include, e.g. range = c(0, 2)

Value

a list of information about the search term

See Also

listSearchItems for available filters

Examples

searchQuery(query="Biological oxidation", species="Mus musculus", types=c("Pathway", "Reaction"))

reactome/ReactomeContentService4R documentation built on May 1, 2023, 5:33 a.m.