getPathways: Pathway related queries

In reactome/ReactomeContentService4R: Interface for the Reactome Content Service

Pathway related queries

Description

To get the Events that contain the given PhysicalEntity or Event (i.e. subpathway).

Usage

getPathways(id, species = NULL, allForms = FALSE, top.level = FALSE)

Arguments

id	a stable or db id of a PhysicalEntity or Event present in the pathways
species	name or taxon id or dbId or abbreviation of species
allForms	if set to TRUE, all low level pathways that contain the given PhysicalEntity (not Event) in all forms returned
top.level	if set to TRUE, only top-level pathways returned

Value

a dataframe containing requested pathways

See Also

Other getContent: getEntities(), getEventsHierarchy(), getOrthology(), getParticipants(), getPerson(), getSchemaClass(), getSpecies(), query()

Examples

getPathways("R-HSA-199420", "Homo sapiens")

reactome/ReactomeContentService4R documentation built on May 1, 2023, 5:33 a.m.