reactome/ReactomeGSA: Client for the Reactome Analysis Service for comparative multi-omics gene set analysis
The ReactomeGSA packages uses Reactome's online analysis service to perform a multi-omics gene set analysis. The main advantage of this package is, that the retrieved results can be visualized using REACTOME's powerful webapplication. Since Reactome's analysis service also uses R to perfrom the actual gene set analysis you will get similar results when using the same packages (such as limma and edgeR) locally. Therefore, if you only require a gene set analysis, different packages are more suited.
Getting started
Browse package contents
Package details |
|
|---|---|
| Bioconductor views | GeneExpression GeneSetEnrichment Proteomics Reactome SystemsBiology Transcriptomics |
| Maintainer | |
| License | MIT + file LICENSE |
| Version | 1.21.2 |
| URL | https://github.com/reactome/ReactomeGSA |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
|
