open_reactome: open_reactome

In reactome/ReactomeGSA: Client for the Reactome Analysis Service for comparative multi-omics gene set analysis

open_reactome

Description

Opens the specified Reactome visualization in the system's default browser.

Usage

open_reactome(x, ...)

Arguments

x	ReactomeAnalysisResult.
...	Additional parameters passed to downstream functions.

Value

The opened link

See Also

Other ReactomeAnalysisResult functions: get_result(), names,ReactomeAnalysisResult-method, pathways(), plot_correlations(), plot_gsva_heatmap(), plot_gsva_pathway(), plot_heatmap(), plot_volcano(), reactome_links(), result_types()

Examples

# Note: This function only works with a newly created result
# since the visualization links only stay active for 7 days

# load an example result
library(ReactomeGSA.data)
data(griss_melanoma_result)

# get the reactome link - this does only work
# with new results
# open_reactome(griss_melanoma_result)

reactome/ReactomeGSA documentation built on Nov. 13, 2023, 11:13 p.m.