pathways: pathways

In reactome/ReactomeGSA: Client for the Reactome Analysis Service for comparative multi-omics gene set analysis

pathways

Description

Combines and returns the pathways of all analysed datasets.

Usage

pathways(x, ...)

Arguments

x	ReactomeAnalysisResult.
...	Additional parameters for specific implementations.

Value

A data.frame containing all merged pathways.

See Also

Other ReactomeAnalysisResult functions: get_result(), names,ReactomeAnalysisResult-method, open_reactome(), plot_correlations(), plot_gsva_heatmap(), plot_gsva_pathway(), plot_heatmap(), plot_volcano(), reactome_links(), result_types()

Examples

# load an example result
library(ReactomeGSA.data)
data(griss_melanoma_result)

# get the combined pathway result
pathway_result <- pathways(griss_melanoma_result)

head(pathway_result)

reactome/ReactomeGSA documentation built on Nov. 13, 2023, 11:13 p.m.