plot_gsva_pathway: plot_gsva_pathway

Description Usage Arguments Value See Also Examples

Description

Plots the expression of a specific pathway from a ssGSEA result.

Usage

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plot_gsva_pathway(object, pathway_id, ...)

Arguments

object

The ReactomeAnalysisResult object.

pathway_id

The pathway's id

...

Additional parameters for specific implementations.

Value

A ggplot2 plot object

See Also

Other ReactomeAnalysisResult functions: get_result(), names,ReactomeAnalysisResult-method, open_reactome(), pathways(), plot_correlations(), plot_gsva_heatmap(), plot_volcano(), reactome_links(), result_types()

Examples

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# load the scRNA-seq example data
library(ReactomeGSA.data)
data(jerby_b_cells)

# perform the GSVA analysis
gsva_result <- analyse_sc_clusters(jerby_b_cells, verbose = FALSE)

# create the plot
plot_obj <- plot_gsva_pathway(gsva_result, "R-HSA-389542")

reactome/ReactomeGSA documentation built on June 9, 2021, 10:07 a.m.