reactome/ReactomeGSA: Client for the Reactome Analysis Service for comparative multi-omics gene set analysis

The ReactomeGSA packages uses Reactome's online analysis service to perform a multi-omics gene set analysis. The main advantage of this package is, that the retrieved results can be visualized using REACTOME's powerful webapplication. Since Reactome's analysis service also uses R to perfrom the actual gene set analysis you will get similar results when using the same packages (such as limma and edgeR) locally. Therefore, if you only require a gene set analysis, different packages are more suited.

Getting started

Package details

Bioconductor views GeneExpression GeneSetEnrichment Proteomics Reactome SystemsBiology Transcriptomics
LicenseMIT + file LICENSE
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
reactome/ReactomeGSA documentation built on April 25, 2023, 11:18 p.m.