reichlab/covidHubUtils
Utility functions for the COVID-19 forecast hub

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Utility functions for the COVID-19 forecast hub

.Rbuildignore
.github/workflows/pkgdown.yaml
.github/workflows/r_cmd_check.yaml
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md R/aggregate_to_weekly.R R/align.R R/as_covid_hub_forecasts.R R/calc_cramers_dist_equal_space.R R/calc_cramers_dist_one_model_pair.R R/calc_cramers_dist_unequal_space.R R/covidHubUtils-package.R R/data.R R/date_management.R R/get_all_models.R R/get_hub_locations.R R/get_model_designations.R R/get_model_metadata.R R/get_plot_forecast_data.R R/get_truth.R R/get_valid_target_list.R R/load_forecasts.R R/load_forecasts_local_zoltar.R R/load_forecasts_repo.R R/load_forecasts_zoltar.R R/load_latest_forecasts.R R/load_latest_forecasts_repo.R R/load_latest_forecasts_zoltar.R R/load_truth.R R/pivot_forecasts_wider.R R/plot_forecasts.R R/score_forecasts.R R/utils.R README.md
data/hub_locations.rda
data/hub_locations_ecdc.rda
data/hub_locations_flusight.rda
data/hub_targets_ecdc.rda
data/hub_targets_flusight.rda
data/hub_targets_us.rda
docs/404.html
docs/articles/covidHubUtils-overview.html
docs/articles/covidHubUtils-overview_files/accessible-code-block-0.0.1/empty-anchor.js
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docs/articles/covidHubUtils-zoltar_sqlite_setup.html
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docs/reference/align_forecasts.html
docs/reference/align_forecasts_one_temporal_resolution.html
docs/reference/as_covid_hub_forecasts.html
docs/reference/calc_cramers_dist_equal_space.html
docs/reference/calc_cramers_dist_one_model_pair.html
docs/reference/calc_cramers_dist_unequal_space.html
docs/reference/calc_forecast_week_end_date.html
docs/reference/calc_submission_due_date.html
docs/reference/calc_target_end_date.html
docs/reference/calc_target_week_end_date.html
docs/reference/covidHubUtils.html
docs/reference/date_to_datetime.html
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docs/reference/download_raw_nytimes.html
docs/reference/download_raw_usafacts.html
docs/reference/get_all_models.html
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docs/reference/get_hub_locations.html
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docs/reference/get_model_forecast_history_local_zoltar.html
docs/reference/get_model_metadata.html
docs/reference/get_models_local_zoltar.html
docs/reference/get_plot_forecast_data.html
docs/reference/get_truth_path.html
docs/reference/get_valid_target_list.html
docs/reference/get_zoltar_project_id_local_zoltar.html
docs/reference/get_zoltar_project_url.html
docs/reference/hub_locations.html
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docs/reference/hub_targets_flusight.html
docs/reference/hub_targets_us.html
docs/reference/index.html
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docs/reference/load_forecasts_local_zoltar.html
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docs/reference/load_from_coviddata.html
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docs/reference/plot_forecast.html
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docs/reference/preprocess_hospitalization.html
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docs/reference/save_truth_for_zoltar.html
docs/reference/score_forecasts.html
docs/reference/setup_zoltar_connection.html
docs/sitemap.xml
man/aggregate_to_weekly.Rd man/align_forecasts.Rd man/align_forecasts_one_temporal_resolution.Rd man/as_covid_hub_forecasts.Rd man/calc_cramers_dist_equal_space.Rd man/calc_cramers_dist_one_model_pair.Rd man/calc_cramers_dist_unequal_space.Rd man/calc_forecast_week_end_date.Rd man/calc_submission_due_date.Rd man/calc_target_end_date.Rd man/calc_target_week_end_date.Rd man/covidHubUtils.Rd man/date_to_datetime.Rd man/date_to_week_end_date.Rd man/download_raw_nytimes.Rd man/get_all_models.Rd man/get_forecast_file_path.Rd man/get_hub_locations.Rd man/get_model_designations.Rd man/get_model_forecast_history_local_zoltar.Rd man/get_model_metadata.Rd man/get_models_local_zoltar.Rd man/get_plot_forecast_data.Rd man/get_truth_path.Rd man/get_valid_target_list.Rd man/get_zoltar_project_id_local_zoltar.Rd man/get_zoltar_project_url.Rd man/hub_locations.Rd man/hub_locations_ecdc.Rd man/hub_locations_flusight.Rd man/hub_targets_ecdc.Rd man/hub_targets_flusight.Rd man/hub_targets_us.Rd man/join_with_hub_locations.Rd man/load_forecast_files_repo.Rd man/load_forecasts.Rd man/load_forecasts_local_zoltar.Rd man/load_forecasts_repo.Rd man/load_forecasts_zoltar.Rd man/load_from_coviddata.Rd man/load_from_hub_repo.Rd man/load_latest_forecasts.Rd man/load_latest_forecasts_repo.Rd man/load_latest_forecasts_zoltar.Rd man/load_truth.Rd man/name_to_fips.Rd man/pivot_forecasts_wider.Rd man/plot_forecast.Rd man/plot_forecasts.Rd man/preprocess_hospitalization.Rd man/preprocess_jhu.Rd man/preprocess_nytimes.Rd man/preprocess_visualization_truth.Rd man/reformat_forecasts.Rd man/score_forecasts.Rd man/setup_zoltar_connection.Rd tests/testthat.R tests/testthat/run-tests.R tests/testthat/test-aggregate_to_weekly.R tests/testthat/test-align.R tests/testthat/test-as_covid_hub_forecasts.R tests/testthat/test-calc_cramers_dist_equal_space.R tests/testthat/test-calc_cramers_dist_one_model_pair.R tests/testthat/test-calc_cramers_dist_unequal_space.R
tests/testthat/test-data/test-aggregate_to_weekly/test_daily_data.csv
tests/testthat/test-data/test-aggregate_to_weekly/test_expected_weekly_data.csv
tests/testthat/test-data/test-get_model_designations folder/data-processed/teamA-modelA/metadata-teamA-modelA.txt
tests/testthat/test-data/test-get_model_designations folder/data-processed/teamB-modelB/metadata-teamB-modelB.txt
tests/testthat/test-data/test-get_model_designations/data-forecasts/TeamA-ModelA/metadata-TeamA-ModelA.txt
tests/testthat/test-data/test-get_model_designations/data-forecasts/TeamB-ModelB/metadata-TeamB-ModelB.txt
tests/testthat/test-data/test-get_model_designations/data-processed/COVIDhub-baseline/metadata-COVIDhub-baseline.txt
tests/testthat/test-data/test-get_model_designations/data-processed/COVIDhub-ensemble/metadata-COVIDhub-ensemble.txt
tests/testthat/test-data/test-get_model_designations/data-processed/teamA-modelA/metadata-teamA-modelA.txt
tests/testthat/test-data/test-get_model_designations/data-processed/teamB-modelB/metadata-teamB-modelB.txt
tests/testthat/test-data/test-get_model_designations/data-processed/teamC-modelC/metadata-teamC-modelC.txt
tests/testthat/test-data/test-get_model_designations/data-processed/teamD-modelD/metadata-teamD-modelD.txt
tests/testthat/test-data/test-get_model_designations/data-processed/teamE-modelE/metadata-teamE-modelE.txt
tests/testthat/test-data/test-get_truth/test_cum_death.csv
tests/testthat/test-data/test-get_truth/test_expected_diff.csv
tests/testthat/test-data/test-get_truth/test_inc_death.csv
tests/testthat/test-data/test-get_truth/test_old_zoltar_truth.csv
tests/testthat/test-data/test-load_forecasts/data-forecasts/TeamA-ModelA/2021-12-13-TeamA-ModelA.csv
tests/testthat/test-data/test-load_forecasts/data-forecasts/TeamA-ModelA/metadata-TeamA-ModelA.txt
tests/testthat/test-data/test-load_forecasts/data-forecasts/TeamB-ModelB/2021-12-13-TeamB-ModelB.csv
tests/testthat/test-data/test-load_forecasts/data-forecasts/TeamB-ModelB/metadata-TeamB-ModelB.txt
tests/testthat/test-data/test-load_forecasts/data-processed/COVIDhub-baseline/2020-12-07-COVIDhub-baseline.csv
tests/testthat/test-data/test-load_forecasts/data-processed/COVIDhub-baseline/2020-12-14-COVIDhub-baseline.csv
tests/testthat/test-data/test-load_forecasts/data-processed/COVIDhub-baseline/2021-06-21-COVIDhub-baseline.csv
tests/testthat/test-data/test-load_forecasts/data-processed/COVIDhub-baseline/metadata-COVIDhub-baseline.txt
tests/testthat/test-data/test-load_forecasts/data-processed/COVIDhub-ensemble/2020-12-07-COVIDhub-ensemble.csv
tests/testthat/test-data/test-load_forecasts/data-processed/COVIDhub-ensemble/2020-12-14-COVIDhub-ensemble.csv
tests/testthat/test-data/test-load_forecasts/data-processed/COVIDhub-ensemble/2021-05-03-COVIDhub-ensemble.csv
tests/testthat/test-data/test-load_forecasts/data-processed/COVIDhub-ensemble/metadata-COVIDhub-ensemble.txt
tests/testthat/test-data/test-load_forecasts/data-processed/model-model1/2020-12-07-model-model1.csv
tests/testthat/test-data/test-load_forecasts/data-processed/model-model1/2020-12-14-model-model1.csv
tests/testthat/test-data/test-load_forecasts_local_zoltar/db.sqlite3
tests/testthat/test-data/test-preprocess_truth_for_zoltar/2020-12-12/2020-12-12_time_series_covid19_deaths_US.csv
tests/testthat/test-data/test-preprocess_truth_for_zoltar/2020-12-14/2020-12-14_time_series_covid19_deaths_US.csv
tests/testthat/test-date_management.R tests/testthat/test-get_model_designations.R tests/testthat/test-get_model_metadata.R tests/testthat/test-get_plot_forecast_data.R tests/testthat/test-get_truth.R tests/testthat/test-load_as_of.R tests/testthat/test-load_forecast_files_repo.R tests/testthat/test-load_forecasts.R tests/testthat/test-load_forecasts_local_zoltar.R tests/testthat/test-load_truth.R tests/testthat/test-name_to_fips.R tests/testthat/test-score_forecasts.R
tests/testthat/truth-Cumulative Hospitalizations.csv
tests/testthat/truth-Incident Hospitalizations.csv
vignettes/covidHubUtils-overview.Rmd
vignettes/covidHubUtils-overview.html
vignettes/covidHubUtils-zoltar_sqlite_setup.Rmd
reichlab/covidHubUtils documentation built on Feb. 6, 2024, 1:42 p.m.

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