plot_cts_per_locus: Plot heatmap of read counts matching each locus primer

In ressy/microsat: Computational, High-throughput Individual Identification through Microsatellite Profiling

Plot heatmap of read counts matching each locus primer

Description

Given a data frame as produced by tally_cts_per_locus, plot a heatmap showing the number of reads matching the forward primer of each locus across samples. Samples are shown on rows with the reads categorized by locus across columns.

Usage

plot_cts_per_locus(cts_per_locus, idx_row = NULL, render = TRUE, ...)

Arguments

cts_per_locus	data frame as produced by tally_cts_per_locus.
idx_row	Optional vector of sample row indices to use. (Using this argument rather than filtering the input allows the same plot scale to be used across plots.)
render	Should the plot be drawn to the display device?
...	additional arguments passed to pheatmap::pheatmap.

See Also

plot_heatmap

ressy/microsat documentation built on Aug. 24, 2023, 10:09 a.m.