plot_dist_mat: Plot Distance Matrix

In ressy/microsat: Computational, High-throughput Individual Identification through Microsatellite Profiling

Plot Distance Matrix

Description

Plot a heatmap of a distance matrix.

Usage

plot_dist_mat(
  dist_mat,
  num_alleles = max(dist_mat),
  dist_display_thresh = round(num_alleles * 2/3),
  ...
)

Arguments

dist_mat	distance matrix as produced by summarize_dataset via make_dist_mat.
num_alleles	the maximum number of matching/mismatching alleles. Used to determine color scaling. Defaults to the highest observed distance in the matrix.
dist_display_thresh	distance value at or below which distances will be explicitly drawn on the heatmap. Above this value only the color-coding will signify distance. Use NA to always show numbers.
...	additional arguments passed to pheatmap::pheatmap.

See Also

make_dist_mat

ressy/microsat documentation built on Aug. 24, 2023, 10:09 a.m.