codonStartStop: Identify all potential start and stop codons in a nucleotide...
In rfctbio-bsu/ORFhunteR: Predict open reading frames in nucleotide sequences
View source: R/codonStartStop.r
codonStartStop R Documentation
Identify all potential start and stop codons in a nucleotide sequence
Description
This function scans a nucleotide sequence of interest
in the search of canonical start codon ATG or non-canonical start
codons GTG, TTG and CTG as well as stop codons TAA, TAG and TGA.
Usage
codonStartStop(x)
Arguments
x
character string giving the nucleotide sequence.
Value
list of potential start and stop codons with their coordinates.
Author(s)
Vasily V. Grinev
Examples
codons <- codonStartStop(x = "AAAATGGCATGGTAAGTC")
rfctbio-bsu/ORFhunteR documentation built on July 16, 2024, 10:40 a.m.
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View source: R/codonStartStop.r
| codonStartStop | R Documentation |
Identify all potential start and stop codons in a nucleotide sequence
Description
This function scans a nucleotide sequence of interest in the search of canonical start codon ATG or non-canonical start codons GTG, TTG and CTG as well as stop codons TAA, TAG and TGA.
Usage
codonStartStop(x)
Arguments
x |
character string giving the nucleotide sequence. |
Value
list of potential start and stop codons with their coordinates.
Author(s)
Vasily V. Grinev
Examples
codons <- codonStartStop(x = "AAAATGGCATGGTAAGTC")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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