translateORFs: Translate open reading frames to proteins

In rfctbio-bsu/ORFhunteR: Predict open reading frames in nucleotide sequences

Translate open reading frames to proteins

Description

Translate the identified open reading frames to proteins.

Usage

translateORFs(seqORFs, aaSymbol = 1, workDir = NULL)

Arguments

seqORFs	character string giving the name of FASTA/FA file with sequences of identified open reading frames.
aaSymbol	type of amino acid symbols (one- or three-letter coding). Default value is 1.
workDir	character string giving the path to and name of work directory. NULL by default that mean the current working directory.

Value

AAStringSet object with protein sequences.

Author(s)

Vasily V. Grinev

Examples

seq_orf_path <- system.file("extdata",
                            "Set.trans_ORFs.sequences.fasta",
                            package = "ORFhunteR")
prot_seqs <- translateORFs(seqORFs = seq_orf_path)

rfctbio-bsu/ORFhunteR documentation built on July 16, 2024, 10:40 a.m.