findORFs: Identify all variants of open reading frames in a nucleotide...
In rfctbio-bsu/ORFhunteR: Predict open reading frames in nucleotide sequences
findORFs R Documentation
Identify all variants of open reading frames in a nucleotide sequence
Description
Identify all possible variants of open reading frames
in a nucleotide sequence of interest.
Usage
findORFs(x, codStart = "ATG")
Arguments
x
character string giving the nucleotide sequence of interest.
codStart
character string with type of start codon: "ATG", "GTG",
"TTG" or "CTG". Default value is "ATG".
Value
matrix with start and stop positions, length and sequence of
identified variants of open reading frames.
Author(s)
Vasily V. Grinev
Examples
x <- "AAAATGGCTGCGTAATGCAAAATGGCTGCGAATGCAAAATGGCTGCGAATGCCGGCACGTTGCTACGT"
orf <- findORFs(x = x, codStart = "ATG")
rfctbio-bsu/ORFhunteR documentation built on July 16, 2024, 10:40 a.m.
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| findORFs | R Documentation |
Identify all variants of open reading frames in a nucleotide sequence
Description
Identify all possible variants of open reading frames in a nucleotide sequence of interest.
Usage
findORFs(x, codStart = "ATG")
Arguments
x |
character string giving the nucleotide sequence of interest. |
codStart |
character string with type of start codon: "ATG", "GTG", "TTG" or "CTG". Default value is "ATG". |
Value
matrix with start and stop positions, length and sequence of identified variants of open reading frames.
Author(s)
Vasily V. Grinev
Examples
x <- "AAAATGGCTGCGTAATGCAAAATGGCTGCGAATGCAAAATGGCTGCGAATGCCGGCACGTTGCTACGT"
orf <- findORFs(x = x, codStart = "ATG")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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