findORFs: Identify all variants of open reading frames in a nucleotide...

View source: R/findORFs.r

findORFsR Documentation

Identify all variants of open reading frames in a nucleotide sequence

Description

Identify all possible variants of open reading frames in a nucleotide sequence of interest.

Usage

findORFs(x, codStart = "ATG")

Arguments

x

character string giving the nucleotide sequence of interest.

codStart

character string with type of start codon: "ATG", "GTG", "TTG" or "CTG". Default value is "ATG".

Value

matrix with start and stop positions, length and sequence of identified variants of open reading frames.

Author(s)

Vasily V. Grinev

Examples

x <- "AAAATGGCTGCGTAATGCAAAATGGCTGCGAATGCAAAATGGCTGCGAATGCCGGCACGTTGCTACGT"
orf <- findORFs(x = x, codStart = "ATG")

rfctbio-bsu/ORFhunteR documentation built on July 16, 2024, 10:40 a.m.