loadTrExper: Load a set of transcripts
In rfctbio-bsu/ORFhunteR: Predict open reading frames in nucleotide sequences

loadTrExper

R Documentation

Load a set of transcripts

Description

Load a set of experimental transcripts.

Usage

loadTrExper(tr, genome = "BSgenome.Hsapiens.UCSC.hg38", workDir = NULL)

Arguments

`tr`	character string giving the name of file with experimental transcripts. Allowed file formats are "fasta", "fa", "gtf" or "gff".
`genome`	character string giving the name of BSgenome data package with full genome sequences. Default value is "BSgenome.Hsapiens.UCSC.hg38".
`workDir`	character string giving the path to and name of work directory. NULL by default that mean the current working directory.

Value

List of loaded transcript sequences.

Author(s)

Vasily V. Grinev

Examples

trans <- system.file("extdata",
                     "Set.trans_sequences.fasta",
                     package = "ORFhunteR")
trans_seq <- loadTrExper(tr = trans)

rfctbio-bsu/ORFhunteR documentation built on July 16, 2024, 10:40 a.m.