Files in rgirardi/atlantisfmsy
Estimation of a functional group's Fmsy in Atlantis ecosystem model
.RData
.Rbuildignore
.Rhistory
.gitignore
DESCRIPTION
NAMESPACE
R/atlantis_diet.R
R/atlantisfmsy.R
R/atlantisfmsy_check.R
R/atlantisfmsy_core.R
R/atlantisfmsy_fileselect.R
R/atlantisfmsy_fscenarios.R
R/atlantisfmsy_ini.R
R/atlantisfmsy_plots.R
R/atlantisfmsy_simu.R
R/atlantisfmsy_simudir.R
R/atlantisfmsy_simurestart.R
TODO_list
atlantisfmsy.Rproj
inst/extdata/README.txt
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inst/extdata/setas-model-new/inputs/forcisets/SETAS_VMPAArsenic.nc
inst/extdata/setas-model-new/inputs/forcisets/SETAS_VMPAhydroA.nc
inst/extdata/setas-model-new/inputs/forcisets/SETAS_VMPAhydroB.nc
inst/extdata/setas-model-new/inputs/forcisets/SETAS_VMPAhydroC.nc
inst/extdata/setas-model-new/inputs/forcisets/SETAS_VMPAhydroD.nc
inst/extdata/setas-model-new/inputs/forcisets/SETAS_VMPAhydroE.nc
inst/extdata/setas-model-new/inputs/forcisets/SETAS_VMPAoxygen.cdf
inst/extdata/setas-model-new/inputs/forcisets/SETAS_VMPAoxygen.nc
inst/extdata/setas-model-new/inputs/forcisets/SETAS_VMPAsalt.nc
inst/extdata/setas-model-new/inputs/forcisets/SETAS_VMPAtemp.nc
inst/extdata/setas-model-new/inputs/forcisets/SETAS_pH.nc
inst/extdata/setas-model-new/inputs/forcisets/pCO2RCP85.ts
inst/extdata/setas-model-new/inputs/forcisets/solar9195.ts
inst/extdata/setas-model-new/inputs/meteor/84-95.nc
inst/extdata/setas-model-new/inputs/meteor/times1.6.nc
inst/extdata/setas-model-new/outputFileNew.cdf
inst/extdata/setas-model-new/runNew
inst/extdata/setas-model-new/runNewExternal
inst/extdata/setas-model-new/runNewOxygen
inst/extdata/setas-model-new/runsetasNew.bat
inst/extdata/setas-model-new/vmpa_setas_diets.xls
man/atlantis_avbiomsp.Rd
man/atlantis_bachchange.Rd
man/atlantis_checkf.Rd
man/atlantis_checkmodule.Rd
man/atlantis_dietextract.Rd
man/atlantis_fchange.Rd
man/atlantis_fdistri.Rd
man/atlantis_fgrpimp.Rd
man/atlantis_fgrpon.Rd
man/atlantis_fleetopen.Rd
man/atlantis_fsimu.Rd
man/atlantis_lastsimu.Rd
man/atlantis_openfile.Rd
man/atlantis_paraselect.Rd
man/atlantis_runtime.Rd
man/atlantis_savestart.Rd
man/atlantis_wsummary.Rd
man/atlantisf_modelcopy.Rd
man/atlantisfmsy.Rd
man/atlantisfmsy_completion.Rd
man/atlantisfmsy_fmaxcatch.Rd
man/atlantisfmsy_inisimu.Rd
man/atlantisfmsy_modelcopy.Rd
man/atlantisfmsy_plot.Rd
man/atlantisfmsy_restart.Rd
man/atlantisfmsy_simu.Rd
man/pathconvert.Rd
tests/testthat.R
vignettes/atlantisfmsy-demo.Rmd
vignettes/package_scheme.pptx
