atlantis_wsummary: Change writing stock state summary periodicity.

In rgirardi/atlantisfmsy: Estimation of a functional group's Fmsy in Atlantis ecosystem model

Change writing stock state summary periodicity.

Description

Change writing stock state summary periodicity in the run parameters file. It opens the run parameters file, select the tsumout parameter and replaces his value by: 365 days.

Usage

atlantis_wsummary(path, exe_name, batch_file = NULL)

Arguments

path	The directory of the batch or shell file.
exe_name	The name of the atlantis executable you used (ex: atlantismain, atlantisNew).
batch_file	The name of the batch/shell file with extension you are using to run your model. If not provided, the function will search for the unique batch file in your folder_path. Default: NULL.

Value

Modify run parameters file.

See Also

atlantis_paraselect for parameters file selection, and atlantis_openfile to open parameter files and select parameters.

Examples

atlantis_wsummary("C:/Atlantis/AtlantisEEC/AtlantisMSY/COD",
 "atlantismain", "runAtlantis.bat")
atlantis_wsummary("/home/Atlantis/AtlantisEEC/AtlantisMSY/COD",
 "atlantisNew", "runAtlantis.sh")

rgirardi/atlantisfmsy documentation built on Aug. 30, 2022, 9:11 a.m.