View source: R/atlantisfmsy_check.R
atlantis_checkmodule | R Documentation |
Test if at least physics, biology and fishery modules are on in
the calibrated model. It looks inside the run parameters file and check if
flag_fisheries_on
= 1, flag_skip_biol
= 0, and
flag_skip_phys
= 0.
atlantis_checkmodule(model_path, exe_name, batch_file = NULL)
model_path |
The directory of the calibrated model (containing all the
parameters files and one bach file. Forcing files can be stored in a direct
parent directory of model_path). WARNING: Only working if the forcing
folder is in the main model directory |
exe_name |
The name of the atlantis executable you used (ex: atlantismain, atlantisNew). |
batch_file |
The name of the batch/shell file with extension you are using
to run your model. If not provided, the function will search for the unique
batch file in your |
test
A binary variable (1) all the modules are on (0) at least
one module is off.
atlantis_paraselect
for parameters file selection, and
atlantis_openfile
to open a parameters file and select a
parameter.
atlantis_checkmodule("C:/Atlantis/AtlantisEEC/AtlantisEECF_v3", "atlantismain", "runAtlantis.bat") atlantis_checkmodule("/home/Atlantis/AtlantisEEC/AtlantisEECF_v3", "atlantisNew", "runAtlantis.sh")
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