Man pages for rgirardi/atlantisfmsy
Estimation of a functional group's Fmsy in Atlantis ecosystem model
| atlantis_avbiomsp | Test if the functional group biomass collapsed. |
| atlantis_bachchange | Change bach/shell Atlantis file. |
| atlantis_checkf | Test if model uses fishing mortality. |
| atlantis_checkmodule | Test if Atlantis modules are on. |
| atlantis_dietextract | Extract availability matrix from biological parameters file |
| atlantis_fchange | Change F in Atlantis. |
| atlantis_fdistri | Atlantis F distribution. |
| atlantis_fgrpimp | Test if functional groups is fished and impacted. |
| atlantis_fgrpon | Test if functional groups is active. |
| atlantis_fleetopen | Test if the fleets are active. |
| atlantisf_modelcopy | Copy the calibrated Atlantis model for F scenarios. |
| atlantisfmsy | atlantisfmsy: Estimate a functional group's Fmsy in Atlantis... |
| atlantisfmsy_completion | Test Fmsy simulation completion. |
| atlantisfmsy_fmaxcatch | Find F with the maximum catch and estimate the next F values... |
| atlantisfmsy_inisimu | F simulations up to the collapse of the stock. |
| atlantisfmsy_modelcopy | Copy the calibrated Atlantis model for Fmsy simulation. |
| atlantisfmsy_plot | Plot catches as a function of the fishing mortality |
| atlantisfmsy_restart | Restart Fmsy simulation. |
| atlantisfmsy_simu | Fmsy estimation in Atlantis ecosystem model. |
| atlantis_fsimu | Run set of fishing strategies scenarios. |
| atlantis_lastsimu | Look for last F simulated. |
| atlantis_openfile | Open parameters file and look for a specific parameter. |
| atlantis_paraselect | Select Atlantis parameters file. |
| atlantis_runtime | Change simulation run time. |
| atlantis_savestart | Change number of days to save from model outputs. |
| atlantis_wsummary | Change writing stock state summary periodicity. |
| pathconvert | Convert paths into shortform on Windows to deals with space... |
