README.md

In richelbilderbeek/pirouette: Create a Bayesian Posterior from a Phylogeny

pirouette

Branch | | ---------|------------------------------------------------------------------------------------------------------------|---------------------------------------------------------------------------------------------------------------------------------------------------------------------- master | | develop||

pirouette is an R package that estimates the error BEAST2 makes from a given phylogeny. This phylogeny can be created using any (non-BEAST) speciation model, for example the Protracted Birth-Death or Multiple-Birth-Death models.

• Installation.
• Examples
• Interpretation.
• Academic article

Common abbreviations

• nsm: Nucleotide Substitution Model
• tral: TRue ALignment
• twal: TWin ALignment

FAQ

See the FAQ.

There is a feature I miss

See CONTRIBUTING, at Submitting use cases

I want to collaborate

See CONTRIBUTING, at 'Submitting code'

I think I have found a bug

See CONTRIBUTING, at 'Submitting bugs'

There's something else I want to say

Sure, just add an Issue. Or send an email.

Package dependencies

master branches

Package | | -------------------------------------------------------|---------------------------------------------------------------------------------------------------|----------------------------------------------------------------------------------------------------------------------------------------------------------------- beautier | | beastier | | mauricer | | mcbette | | tracerer | |

develop branches

Package | | -------------------------------------------------------|------------------------------------------------------------------------------------------------------------------------------------|----------------------------------------------------------------------------------------------------------------------------------------------------------------- beautier | | beastier | | mauricer | | mcbette | | tracerer | |

Windows

Package | Status ------------------------------------------------------------------------------|------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ babette_on_windows | beastier_on_windows| beautier_on_windows| mauricer_on_windows| tracerer_on_windows|

External links

• BEAST2 GitHub

References

• Bilderbeek, RJC, Laudanno, G, Etienne, RS. Quantifying the impact of an inference model in Bayesian phylogenetics. Methods Ecol Evol. 2020; 00: 1– 8. https://doi.org/10.1111/2041-210X.13514

richelbilderbeek/pirouette documentation built on Oct. 18, 2023, 3:09 p.m.