doc/install.md

In richelbilderbeek/pirouette: Create a Bayesian Posterior from a Phylogeny

Installation

pirouette can be installed

• from script (easiest)
• from R

From script

All the manual steps are put in the install_pir_deps script, which is located in the scripts folder.

To call the script:

cd scripts
./install_pir_deps

From R

Thanks to the remotes R package, this is easy:

remotes::install_github("ropensci/mcbette", dependencies = TRUE)
remotes::install_github("richelbilderbeek/pirouette")

To install BEAST2, see how to install BEAST2 or use:

beastier::install_beast2()

To install the BEAST2 NS package:

mauricer::install_beast2_pkg("NS")

Videos

• How to run an R script on Peregrine download (.ogv) YouTube
• How to install the pirouette R package on Peregrine download (.ogv) YouTube
• How to run a pirouette example on Peregrine download (.ogv) YouTube

richelbilderbeek/pirouette documentation built on Oct. 18, 2023, 3:09 p.m.