create_bd_tree: Create a (constant-rate) birth-death (BD) tree

In richelbilderbeek/pirouette: Create a Bayesian Posterior from a Phylogeny

Create a (constant-rate) birth-death (BD) tree

Description

Create a (constant-rate) birth-death (BD) tree

Usage

create_bd_tree(n_taxa = 6, crown_age = 10, n_0 = 2, mu = 0.1)

Arguments

n_taxa	number of tree tips
crown_age	the fixed crown age of the posterior. Set to NA to let it be estimated
n_0	number of starting species
mu	per-species extinction rate

Value

a phylogenetic tree of type phylo

Author(s)

Giovanni Laudanno, Richèl J.C. Bilderbeek

Examples

n_taxa <- 31
crown_age <- 41
phylogeny <- create_bd_tree(
  n_taxa = n_taxa,
  crown_age = crown_age
)

richelbilderbeek/pirouette documentation built on Oct. 18, 2023, 3:09 p.m.