create_exemplary_dd_tree: Create an exemplary diversity-dependent (DD) birth-death...

In richelbilderbeek/pirouette: Create a Bayesian Posterior from a Phylogeny

Create an exemplary diversity-dependent (DD) birth-death tree.

Description

Create an exemplary diversity-dependent (DD) birth-death tree, that is, a DD tree with a strong DD effect. The DD tree produced most likely has the desired number of taxa, but this is not always the case.

Usage

create_exemplary_dd_tree(n_taxa = 6, crown_age = 10, extinction_rate = 0.1)

Arguments

n_taxa	number of tree tips
crown_age	the fixed crown age of the posterior. Set to NA to let it be estimated
extinction_rate	per-species extinction rate

Value

a phylo

Author(s)

Giovanni Laudanno, Richèl J.C. Bilderbeek

See Also

Use create_exemplary_dd_tree_giappo for a different way to generate exemplary trees with a strong DD effect.

Examples

create_exemplary_dd_tree(
  n_taxa = 3,
  crown_age = 1
)

richelbilderbeek/pirouette documentation built on Oct. 18, 2023, 3:09 p.m.