View source: R/get_gamma_error_fun.R
get_gamma_error_fun | R Documentation |
Get an error function that uses the difference in gamma statistic.
get_gamma_error_fun()
an error function
the gamma statistic can be found in Pybus and Harvey, 2000, 'Testing macro-evolutionary models using incomplete molecular phylogenies.', Proc. R. Soc. Lond. B, 267, 2267-2272.
Richèl J.C. Bilderbeek
error_fun <- get_gamma_error_fun()
phylogeny <- ape::read.tree(text = "((A:1.5, B:1.5):1.5, C:3.0);")
tree_1 <- ape::read.tree(text = "((A:1.0, B:1.0):2.0, C:3.0);")
tree_2 <- ape::read.tree(text = "((A:2.0, B:2.0):1.0, C:3.0);")
trees <- c(tree_1, tree_2)
error_fun(phylogeny, c(phylogeny))
error_fun(phylogeny, c(tree_1))
error_fun(phylogeny, c(tree_2))
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