pir_runs | R Documentation |
This is a simple convenience functions: supply as much phylogenies as pirouette parameter sets. For each phylogeny-parameters pair, pir_run is called.
pir_runs(phylogenies, pir_paramses)
phylogenies |
a list of phylogenies, each phylogeny being of class phylo |
pir_paramses |
a list of pirouette parameters, each element created by create_pir_params. |
a list of pir_run outputs.
Richèl J.C. Bilderbeek
Use pir_run for a single pirouette run.
Use pir_plots to plot the output of this function.
Use check_pir_out on each list element, to check its validity.
if (beautier::is_on_ci() && beastier::is_beast2_installed()) {
pir_paramses <- list()
pir_paramses[[1]] <- create_test_pir_params()
pir_paramses[[2]] <- create_test_pir_params()
phylogenies <- list()
phylogenies[[1]] <- ape::read.tree(text = "((A:2, B:2):1, C:3);")
phylogenies[[2]] <- ape::read.tree(text = "((A:1, B:1):2, C:3);")
pir_outs <- pir_runs(
phylogenies = phylogenies,
pir_paramses = pir_paramses
)
for (pir_out in pir_outs) {
check_pir_out(pir_out)
}
}
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