bbt_delete_temp_files: Delete all the temporary files created by bbt_run_from_model

View source: R/bbt_delete_temp_files.R

bbt_delete_temp_filesR Documentation

Delete all the temporary files created by bbt_run_from_model

Description

Delete all the temporary files created by bbt_run_from_model

Usage

bbt_delete_temp_files(inference_model, beast2_options)

Arguments

inference_model

a Bayesian phylogenetic inference model, as returned by create_inference_model

beast2_options

'BEAST2' options, as can be created by create_beast2_options

Author(s)

Richèl J.C. Bilderbeek

Examples

if (beautier::is_on_ci() && is_beast2_installed()) {
  beastier::remove_beaustier_folders()
  beastier::check_empty_beaustier_folders()

  # Do a minimal run
  inference_model <- create_test_inference_model()
  beast2_options <- create_beast2_options()
  bbt_run_from_model(
    fasta_filename = get_fasta_filename(),
    inference_model = inference_model,
    beast2_options = beast2_options
  )

  # Cleanup
  bbt_delete_temp_files(
    inference_model = inference_model,
    beast2_options = beast2_options
  )

  beastier::remove_beaustier_folders()
  beastier::check_empty_beaustier_folders()
}

richelbilderbeek/rbeast2 documentation built on Aug. 15, 2022, 1:10 a.m.