bbt_delete_temp_files: Delete all the temporary files created by bbt_run_from_model

In richelbilderbeek/rbeast2: Control 'BEAST2'

Delete all the temporary files created by bbt_run_from_model

Description

Delete all the temporary files created by bbt_run_from_model

Usage

bbt_delete_temp_files(inference_model, beast2_options)

Arguments

inference_model	a Bayesian phylogenetic inference model, as returned by create_inference_model
beast2_options	'BEAST2' options, as can be created by create_beast2_options

Value

Nothing.

Author(s)

Richèl J.C. Bilderbeek

Examples

if (beautier::is_on_ci() && is_beast2_installed()) {
  beastier::remove_beaustier_folders()
  beastier::check_empty_beaustier_folders()

  # Do a minimal run
  inference_model <- create_test_inference_model()
  beast2_options <- create_beast2_options()
  bbt_run_from_model(
    fasta_filename = get_fasta_filename(),
    inference_model = inference_model,
    beast2_options = beast2_options
  )

  # Cleanup
  bbt_delete_temp_files(
    inference_model = inference_model,
    beast2_options = beast2_options
  )

  beastier::remove_beaustier_folders()
  beastier::check_empty_beaustier_folders()
}

richelbilderbeek/rbeast2 documentation built on July 2, 2024, 9:39 p.m.