plot_densitree: Draw multiple trees on top of one another.

In richelbilderbeek/rbeast2: Control 'BEAST2'

Draw multiple trees on top of one another.

Description

Draw multiple trees on top of one another.

Usage

plot_densitree(phylos, ...)

Arguments

phylos	one or more phylogenies, must be of class multiPhylo
...	options to be passed to phangorn's densiTree function

Value

nothing. Will produce a plot.

Author(s)

Richèl J.C. Bilderbeek

Examples

if (beautier::is_on_ci() && is_beast2_installed()) {
  beastier::remove_beaustier_folders()
  beastier::check_empty_beaustier_folders()

  inference_model <- create_test_inference_model()
  beast2_options <- create_beast2_options()

   out <- bbt_run_from_model(
    get_babette_path("anthus_aco.fas"),
    inference_model = inference_model,
    beast2_options = beast2_options
  )
  bbt_delete_temp_files(
    inference_model = inference_model,
    beast2_options = beast2_options
  )

  plot_densitree(out$anthus_aco_trees)

  # Clean up temporary files created by babette
  bbt_delete_temp_files(
    inference_model = inference_model,
    beast2_options = beast2_options
  )
  beastier::remove_beaustier_folders()
  beastier::check_empty_beaustier_folders()
}

richelbilderbeek/rbeast2 documentation built on June 9, 2025, 7:39 a.m.