parse_beast2_output: Process the 'BEAST2' output dependent on 'BEAST2' package...

View source: R/parse_beast2_output.R

parse_beast2_outputR Documentation

Process the 'BEAST2' output dependent on 'BEAST2' package specifics

Description

Process the 'BEAST2' output dependent on 'BEAST2' package specifics

Usage

parse_beast2_output(out, inference_model)

Arguments

out

a list with the complete babette output, with elements:

  • output textual output of a 'BEAST2' run

inference_model

a Bayesian phylogenetic inference model, as returned by create_inference_model

Value

complete babette output with added attributes, which depends on the 'BEAST2' package.

  • marg_log_lik the marginal log likelihood estimate

  • marg_log_lik_sd the standard deviation around the estimate

  • estimates the parameter estimates created during the marginal likelihood estimation

  • trees the trees created during the marginal likelihood estimation

Author(s)

Richèl J.C. Bilderbeek


richelbilderbeek/rbeast2 documentation built on Aug. 15, 2022, 1:10 a.m.