prepare_file_creation: Internal function to prepare for 'BEAST2' creating files

In richelbilderbeek/rbeast2: Control 'BEAST2'

Internal function to prepare for 'BEAST2' creating files

Description

The inference model and 'BEAST2' options contain paths that may point to sub-sub-sub folders. Create those folders and test if these folders can be written to

Usage

prepare_file_creation(inference_model, beast2_options)

Arguments

inference_model	a Bayesian phylogenetic inference model, as returned by create_inference_model
beast2_options	'BEAST2' options, as can be created by create_beast2_options

Examples

# This example will fail on the CRAN
# r-oldrel-macos-x86_64 platform
if (rappdirs::app_dir()$os != "mac") {
  beastier::remove_beaustier_folders()
  beastier::check_empty_beaustier_folders()

  # For a test inference model, the files can be prepared
  inference_model <- create_test_inference_model()
  beast2_options <- create_beast2_options()
  prepare_file_creation(inference_model, beast2_options)

  beastier::remove_beaustier_folders()
  beastier::check_empty_beaustier_folders()
}

richelbilderbeek/rbeast2 documentation built on Sept. 30, 2023, 9:39 a.m.