| a2i |
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| are_from_same_distribution |
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| calc_dmid |
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| collect_all |
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| collect_file_esses |
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| collect_file_n_alignments |
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| collect_file_n_posteriors |
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| collect_file_nltt_stats |
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| collect_file_nltts |
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| collect_file_nrbss |
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| collect_file_posterior_gammas |
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| collect_file_posterior_nltts |
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| collect_file_pstr_crown_ages |
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| collect_file_pstr_likelihoods |
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| collect_file_stree_gammas |
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| collect_file_stree_nltts |
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| collect_files_alignments |
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| collect_files_alignments_dmid |
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| collect_files_esses |
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| collect_files_esses_from_logs |
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| collect_files_n_alignments |
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| collect_files_n_posteriors |
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| collect_files_n_species_trees |
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| collect_files_n_taxa |
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| collect_files_nltt_stats |
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| collect_files_nltt_stats_dirty |
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| collect_files_nrbss |
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| collect_files_operators |
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| collect_files_parameters |
Man page
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| collect_files_posterior_gammas |
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| collect_files_posterior_nltts |
Man page
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| collect_files_pstr_crown_ages |
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| collect_files_pstr_likelihoods |
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| collect_files_stree_gammas |
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| collect_files_stree_nltts |
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| collect_files_strees_identical |
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| collect_gamma_statistics |
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| collect_log_file_info |
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| collect_log_files_info |
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| collect_n_species_trees |
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| collect_n_taxa |
Man page
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| collect_nltt_stats |
Man page
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| collect_species_tree_n_taxa |
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| convert_alignment_to_fasta |
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| create_figure_acceptance_mcmc_operators |
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| create_figure_alignment_qualities |
Man page
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| create_figure_error |
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| create_figure_error_alignment_length |
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| create_figure_error_alignment_length_mean |
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| create_figure_error_alignment_length_median |
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| create_figure_error_bd |
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| create_figure_error_bd_mean |
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| create_figure_error_for_scr |
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| create_figure_error_low_high_ess |
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| create_figure_error_low_high_ess_mean |
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| create_figure_error_max |
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| create_figure_error_mean_dur_spec |
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| create_figure_error_mean_dur_spec_alignment_length |
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| create_figure_error_mean_dur_spec_mean |
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| create_figure_error_mean_dur_spec_mean_alignment_length |
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| create_figure_error_mean_dur_spec_mean_sampling |
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| create_figure_error_mean_dur_spec_median |
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| create_figure_error_mean_dur_spec_sampling |
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| create_figure_error_posterior_nltt_si |
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| create_figure_error_sampling_representative |
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| create_figure_error_tree_size |
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| create_figure_ess_distribution |
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| create_figure_ess_distribution_likelihood |
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| create_figure_ess_expected_mean_dur_spec_alignment_length |
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| create_figure_exit_statuses |
Man page
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| create_figure_exit_statuses_posteriors |
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| create_figure_lowest_ess |
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| create_figure_posterior_bd |
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| create_figure_posterior_crown_ages |
Man page
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| create_figure_posterior_likelihoods |
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| create_figure_posterior_nltts |
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| create_figure_run_times |
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| create_figure_strees_different |
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| create_log_filenames |
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| create_table_109 |
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| create_table_111 |
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| create_table_112 |
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| file_to_lines |
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| find_path |
Man page
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| find_paths |
Man page
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| get_phylogeny_crown_age |
Man page
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| has_alignments |
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| have_same_strees |
Man page
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| is_distributed_normally |
Man page
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| is_good_alignment |
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| is_whole_number |
Man page
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| nrbs |
Man page
|
| p2i |
Man page
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| postrs_same_distr_nltt_stat |
Man page
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| read_collected_alignments |
Man page
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| read_collected_esses |
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| read_collected_gammas_postrs |
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| read_collected_gammas_strees |
Man page
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| read_collected_log_files_info |
Man page
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| read_collected_n_taxa |
Man page
|
| read_collected_nltt_stats |
Man page
|
| read_collected_nltts_postrs |
Man page
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| read_collected_nltts_strees |
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| read_collected_operators |
Man page
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| read_collected_parameters |
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|
| read_collected_posterior_nltts |
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|
| read_collected_pstr_crown_ages |
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| read_collected_pstr_liks |
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| read_collected_strees_identical |
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|
