API for richelbilderbeek/wiritttea
WIRITTTE analysis

Global functions
a2i Man page Source code
are_from_same_distribution Man page Source code
calc_dmid Man page Source code
collect_all Man page Source code
collect_file_esses Man page Source code
collect_file_n_alignments Man page Source code
collect_file_n_posteriors Man page Source code
collect_file_nltt_stats Man page Source code
collect_file_nltts Man page Source code
collect_file_nrbss Man page Source code
collect_file_posterior_gammas Man page Source code
collect_file_posterior_nltts Man page Source code
collect_file_pstr_crown_ages Man page Source code
collect_file_pstr_likelihoods Man page Source code
collect_file_stree_gammas Man page Source code
collect_file_stree_nltts Man page Source code
collect_files_alignments Man page Source code
collect_files_alignments_dmid Man page Source code
collect_files_esses Man page Source code
collect_files_esses_from_logs Man page Source code
collect_files_n_alignments Man page Source code
collect_files_n_posteriors Man page Source code
collect_files_n_species_trees Man page Source code
collect_files_n_taxa Man page Source code
collect_files_nltt_stats Man page Source code
collect_files_nltt_stats_dirty Man page Source code
collect_files_nrbss Man page Source code
collect_files_operators Man page Source code
collect_files_parameters Man page Source code
collect_files_posterior_gammas Man page Source code
collect_files_posterior_nltts Man page Source code
collect_files_pstr_crown_ages Man page Source code
collect_files_pstr_likelihoods Man page Source code
collect_files_stree_gammas Man page Source code
collect_files_stree_nltts Man page Source code
collect_files_strees_identical Man page Source code
collect_gamma_statistics Man page Source code
collect_log_file_info Man page Source code
collect_log_files_info Man page Source code
collect_n_species_trees Man page Source code
collect_n_taxa Man page Source code
collect_nltt_stats Man page Source code
collect_species_tree_n_taxa Man page Source code
convert_alignment_to_fasta Man page Source code
create_figure_acceptance_mcmc_operators Man page Source code
create_figure_alignment_qualities Man page Source code
create_figure_error Man page Source code
create_figure_error_alignment_length Man page Source code
create_figure_error_alignment_length_mean Man page Source code
create_figure_error_alignment_length_median Man page Source code
create_figure_error_bd Man page Source code
create_figure_error_bd_mean Man page Source code
create_figure_error_for_scr Man page Source code
create_figure_error_low_high_ess Man page Source code
create_figure_error_low_high_ess_mean Man page Source code
create_figure_error_max Man page Source code
create_figure_error_mean_dur_spec Man page Source code
create_figure_error_mean_dur_spec_alignment_length Man page Source code
create_figure_error_mean_dur_spec_mean Man page Source code
create_figure_error_mean_dur_spec_mean_alignment_length Man page Source code
create_figure_error_mean_dur_spec_mean_sampling Man page Source code
create_figure_error_mean_dur_spec_median Man page Source code
create_figure_error_mean_dur_spec_sampling Man page Source code
create_figure_error_posterior_nltt_si Man page Source code
create_figure_error_sampling_representative Man page Source code
create_figure_error_tree_size Man page Source code
create_figure_ess_distribution Man page Source code
create_figure_ess_distribution_likelihood Man page Source code
create_figure_ess_expected_mean_dur_spec_alignment_length Man page Source code
create_figure_exit_statuses Man page Source code
create_figure_exit_statuses_posteriors Man page Source code
create_figure_lowest_ess Man page Source code
create_figure_posterior_bd Man page Source code
create_figure_posterior_crown_ages Man page Source code
create_figure_posterior_likelihoods Man page Source code
create_figure_posterior_nltts Man page Source code
create_figure_run_times Man page Source code
create_figure_strees_different Man page Source code
create_log_filenames Man page Source code
create_table_109 Man page Source code
create_table_111 Man page Source code
create_table_112 Man page Source code
file_to_lines Man page Source code
find_path Man page Source code
find_paths Man page Source code
get_phylogeny_crown_age Man page Source code
has_alignments Man page Source code
have_same_strees Man page Source code
is_distributed_normally Man page Source code
is_good_alignment Man page Source code
is_whole_number Man page Source code
nrbs Man page Source code
onLoad Source code
p2i Man page Source code
postrs_same_distr_nltt_stat Man page Source code
read_collected_alignments Man page Source code
read_collected_esses Man page Source code
read_collected_gammas_postrs Man page Source code
read_collected_gammas_strees Man page Source code
read_collected_log_files_info Man page Source code
read_collected_n_taxa Man page Source code
read_collected_nltt_stats Man page Source code
read_collected_nltts_postrs Man page Source code
read_collected_nltts_strees Man page Source code
read_collected_operators Man page Source code
read_collected_parameters Man page Source code
read_collected_posterior_nltts Man page Source code
read_collected_pstr_crown_ages Man page Source code
read_collected_pstr_liks Man page Source code
read_collected_strees_identical Man page Source code
richelbilderbeek/wiritttea documentation built on Oct. 17, 2017, 1:34 p.m.