collect_log_file_info: Collects information of a log file in the melted/uncast/long...

In richelbilderbeek/wiritttea: WIRITTTE analysis

Description

Collects information of a log file in the melted/uncast/long form

Usage

collect_log_file_info(filename)

Arguments

filename

name of the .log file

Value

A dataframe of log file info. The 'exit_status' column contains exit statuses with the following values possible: 'OK' means that no problems were encounters, 'memory' denotes that there was more memory used than reserved, 'died' means that the task died by a signal, 'invalid_file' is stated when the .RDa file to read from was invalid, 'alignment' and 'no_dnabin' are caused from an unreadable or unmanagable alignment, 'fasta' and 'fasta_io' results from an unreadable FASTA file (a temporary created by 'add_posterior'), 'trees' results from an unreadable '.trees' file, 'save_posterior' is caused by a failure when saving a BEAST2 posterior

Examples

  filename <- wiritttea::find_path("add_alignments_ok.log")
  df <- wiritttea::collect_log_file_info(filename)
  testit::assert(names(df) == c("filename", "exit_status", "sys_time"))
  testit::assert(nrow(df) == 1)

richelbilderbeek/wiritttea documentation built on May 27, 2019, 8:02 a.m.