collect_file_nltts: Collects the nLTTs of all phylogenies belonging to a...
In richelbilderbeek/wiritttea: WIRITTTE analysis

Description Usage Arguments Value Examples

Collects the nLTTs of all phylogenies belonging to a parameter file in the melted/uncast/long form

1	collect_file_nltts(filename, dt = 0.001)

`filename`	name of the parameter file
`dt`	the resolution of the nLTT plot, must be in range <0,1>, default is 0.001

A dataframe of gamma statistics of each phylogeny in time

  dt <- 0.1
  filename <- find_path("toy_example_3.RDa")
  df <- collect_file_nltts(filename)
  testit::assert(names(df) == c("species_tree_nltts", "posterior_nltts"))
  testit::assert(names(df$species_tree_nltts)
    == c("sti", "t", "nltt")
  )
  testit::assert(nrow(df$species_tree_nltts) > 2)
  testit::assert(nrow(df$posterior_nltts) == 80)