have_same_strees: See if a file its two species trees have different branch...

In richelbilderbeek/wiritttea: WIRITTTE analysis

Description

See if a file its two species trees have different branch lengths

Usage

have_same_strees(file)

Arguments

file	The file, as read from wiritttes::read_file

Value

TRUE if the two species have different branch lengths, else FALSE # Create a parameter file filename <- "add_species_trees_example.RDa" save_parameters_to_file( rng_seed = 42, sirg = 0.5, siri = 0.5, scr = 0.5, erg = 0.5, eri = 0.5, age = 5, mutation_rate = 0.1, n_alignments = 1, sequence_length = 10, nspp = 10, n_beast_runs = 1, filename = filename )

# Simulate an incipient species tree add_pbd_output(filename)

# Add the species trees add_species_trees(filename = filename) testit::assert(has_species_trees(read_file(filename)))

testit::assert(have_same_strees(read_file(filename)))

Author(s)

Richel Bilderbeek

richelbilderbeek/wiritttea documentation built on May 27, 2019, 8:02 a.m.