API for richierocks/limma2
Linear Models for Microarray Data

Global functions
01.Introduction	Man page
02.Classes	Man page
03.ReadingData	Man page
04.Background	Man page
05.Normalization	Man page
06.LinearModels	Man page
07.SingleChannel	Man page
08.Tests	Man page
09.Diagnostics	Man page
10.Other	Man page
EList-class	Man page
EListRaw-class	Man page
FStat	Man page
LargeDataObject-class	Man page
MA.RG	Man page
MAList-class	Man page
MArrayLM-class	Man page
MDS-class	Man page
PrintLayout-class	Man page
QualityWeights	Man page
RG.MA	Man page
RGList-class	Man page
Roast-class	Man page
TestResults-class	Man page
[.EList	Man page
[.EListRaw	Man page
[.MAList	Man page
[.MArrayLM	Man page
[.RGList	Man page
alias2Symbol	Man page
alias2SymbolTable	Man page
anova.MAList	Man page
array2channel	Man page
arrayWeights	Man page
arrayWeightsQuick	Man page
arrayWeightsSimple	Man page
as.MAList	Man page
as.data.frame.EList	Man page
as.data.frame.EListRaw	Man page
as.data.frame.MAList	Man page
as.data.frame.MArrayLM	Man page
as.matrix.EList	Man page
as.matrix.EListRaw	Man page
as.matrix.ExpressionSet	Man page
as.matrix.LumiBatch	Man page
as.matrix.MAList	Man page
as.matrix.MArrayLM	Man page
as.matrix.PLMset	Man page
as.matrix.RGList	Man page
as.matrix.marrayNorm	Man page
as.matrix.vsn	Man page
asMatrixWeights	Man page
auROC	Man page
avearrays	Man page
avearrays.EList	Man page
avearrays.MAList	Man page
avearrays.default	Man page
avedups	Man page
avedups.EList	Man page
avedups.MAList	Man page
avedups.default	Man page
avereps	Man page
avereps.EList	Man page
avereps.EListRaw	Man page
avereps.MAList	Man page
avereps.RGList	Man page
avereps.default	Man page
backgroundCorrect	Man page
backgroundCorrect.matrix	Man page
barcodeplot	Man page
beadCountWeights	Man page
blockDiag	Man page
bwss	Man page
bwss.matrix	Man page
camera	Man page
camera.EList	Man page
camera.MAList	Man page
camera.default	Man page
cbind	Man page
cbind.EList	Man page
cbind.EListRaw	Man page
cbind.MAList	Man page
cbind.RGList	Man page
changeLog	Man page
classifyTestsF	Man page
classifyTestsP	Man page
classifyTestsT	Man page
coerce,RGList,exprSet2-method	Man page
contrastAsCoef	Man page
contrasts.fit	Man page
controlStatus	Man page
convest	Man page
decideTests	Man page
designI2A	Man page
designI2M	Man page
dim.EList	Man page
dim.EListRaw	Man page
dim.MAList	Man page
dim.MArrayLM	Man page
dim.RGList	Man page
dimnames.EList	Man page
dimnames.EListRaw	Man page
dimnames.MAList	Man page
dimnames.MArrayLM	Man page
dimnames.RGList	Man page
dimnames<-.EList	Man page
dimnames<-.EListRaw	Man page
dimnames<-.MAList	Man page
dimnames<-.RGList	Man page
duplicateCorrelation	Man page
eBayes	Man page
ebayes	Man page
estimate.m0	Man page
exprs.MA	Man page
fitFDist	Man page
fitFDistRobustly	Man page
fitGammaIntercept	Man page
fitted.MArrayLM	Man page
genas	Man page Man page
geneSetTest	Man page
getDupSpacing	Man page
getEAWP	Man page
getLayout	Man page
getLayout2	Man page
getSpacing	Man page
gls.series	Man page
gridc	Man page
gridr	Man page
heatDiagram	Man page
heatdiagram	Man page
helpMethods	Man page
imageplot	Man page
imageplot3by2	Man page
interGeneCorrelation	Man page
intraspotCorrelation	Man page
is.fullrank	Man page
isNumeric	Man page
kooperberg	Man page
length.EList	Man page
length.EListRaw	Man page
length.MAList	Man page
length.MArrayLM	Man page
length.RGList	Man page
limma	Man page
limma-package	Man page
limmaUsersGuide	Man page
lm.series	Man page
lmFit	Man page
lmscFit	Man page
loessFit	Man page
ma3x3.matrix	Man page
ma3x3.spottedarray	Man page
makeContrasts	Man page
makeUnique	Man page
mdplot	Man page
merge.EList	Man page
merge.EListRaw	Man page
merge.MAList	Man page
merge.RGList	Man page
mergeScans	Man page
mergeScansRG	Man page
modelMatrix	Man page
modifyWeights	Man page
mrlm	Man page
mroast	Man page
mroast.EList	Man page
mroast.MAList	Man page
mroast.default	Man page
nec	Man page
neqc	Man page
nonEstimable	Man page
normalizeBetweenArrays	Man page
normalizeCyclicLoess	Man page
normalizeForPrintorder	Man page
normalizeForPrintorder.rg	Man page
normalizeMedianAbsValues	Man page
normalizeMedianValues	Man page
normalizeQuantiles	Man page
normalizeRobustSpline	Man page
normalizeVSN	Man page
normalizeVSN.EListRaw	Man page
normalizeVSN.RGList	Man page
normalizeVSN.default	Man page
normalizeWithinArrays	Man page
normexp.fit	Man page
normexp.fit.control	Man page
normexp.fit.detection.p	Man page
normexp.signal	Man page
plotDensities	Man page
plotDensities.EList	Man page
plotDensities.EListRaw	Man page
plotDensities.MAList	Man page
plotDensities.RGList	Man page
plotDensities.default	Man page
plotFB	Man page
plotFB.EListRaw	Man page
plotFB.RGList	Man page
plotFB.default	Man page
plotMA	Man page
plotMA.EList	Man page
plotMA.MAList	Man page
plotMA.MArrayLM	Man page
plotMA.RGList	Man page
plotMA.default	Man page
plotMA3by2	Man page
plotMDS	Man page
plotMDS.MDS	Man page
plotMDS.default	Man page
plotPrintTipLoess	Man page
plotPrintorder	Man page
plotRLDF	Man page
plotSA	Man page
plotlines	Man page
poolVar	Man page
predFCm	Man page Man page
printHead	Man page
printorder	Man page
printtipWeights	Man page
printtipWeightsSimple	Man page
propTrueNull	Man page
propexpr	Man page
protectMetachar	Man page
qqf	Man page
qqt	Man page
rankSumTestWithCorrelation	Man page
rbind.EList	Man page
rbind.EListRaw	Man page
rbind.MAList	Man page
rbind.RGList	Man page
read.columns	Man page
read.ilmn	Man page
read.ilmn.targets	Man page
read.imagene	Man page
read.maimages	Man page
readGAL	Man page
readGPRHeader	Man page
readGenericHeader	Man page
readImaGeneHeader	Man page
readSMDHeader	Man page
readSpotTypes	Man page
readTargets	Man page
removeBatchEffect	Man page
removeExt	Man page
residuals.MArrayLM	Man page
roast	Man page
roast.EList	Man page
roast.MAList	Man page
roast.default	Man page
romer	Man page
romer2	Man page
selectModel	Man page
show,LargeDataObject-method	Man page
show,MDS-method	Man page
show,Roast-method	Man page
show,TestResults-method	Man page
spotc	Man page
spotr	Man page
squeezeVar	Man page
strsplit2	Man page
subsetListOfArrays	Man page
subsetting	Man page
summary.EList	Man page
summary.EListRaw	Man page
summary.MAList	Man page
summary.MArrayLM	Man page
summary.RGList	Man page
summary.TestResults	Man page
symbols2indices	Man page
tZscore	Man page
targetsA2C	Man page
tmixture.matrix	Man page
tmixture.vector	Man page
topRomer	Man page
topTable	Man page
topTableF	Man page
topTreat	Man page
toptable	Man page
treat	Man page
trigammaInverse	Man page
trimWhiteSpace	Man page
uniqueTargets	Man page
uniquegenelist	Man page
unwrapdups	Man page
vennCounts	Man page
vennDiagram	Man page
volcanoplot	Man page
voom	Man page
vooma	Man page
voomaByGroup	Man page
weighted.median	Man page
wilcoxGST	Man page
write.fit	Man page
wtIgnore.Filter	Man page
wtarea	Man page
wtflags	Man page
zscore	Man page
zscoreGamma	Man page
zscoreHyper	Man page
zscoreT	Man page