featureGroupsComparison-class: Feature groups comparison class

In rickhelmus/patRoon: Workflows for Mass-Spectrometry Based Non-Target Analysis

Feature groups comparison class

Description

This class is used for comparing different featureGroups objects.

Usage

## S4 method for signature 'featureGroupsComparison'
names(x)

## S4 method for signature 'featureGroupsComparison'
length(x)

## S4 method for signature 'featureGroupsComparison,ANY,missing,missing'
x[i, j, ..., drop = TRUE]

## S4 method for signature 'featureGroupsComparison,ANY,missing'
x[[i, j]]

## S4 method for signature 'featureGroupsComparison'
x$name

Arguments

x	A featureGroupsComparison object.
i	For [/[[: A numeric or character value which is used to select labels by their index or name, respectively (for the order/names see names()). For [: Can also be logical to perform logical selection (similar to regular vectors). If missing all labels are selected. For [[: should be a scalar value.
...	Ignored.
drop, j	ignored.
name	The label name (partially matched).

Details

Objects from this class are returned by comparison.

Methods (by generic)

• names(featureGroupsComparison): Obtain the labels that were given to each compared feature group.

• length(featureGroupsComparison): Number of feature groups objects that were compared.

• x[i: Subset on labels that were assigned to compared feature groups.

• x[[i: Extract a featureGroups object by its label.

• $: Extract a compound table for a feature group.

Slots

fGroupsList

A list of featureGroups object that were compared

comparedFGroups

A pseudo featureGroups object containing grouped feature groups.

rickhelmus/patRoon documentation built on Nov. 22, 2024, 3:11 p.m.