findFeaturesEnviPick: Find features using enviPick

In rickhelmus/patRoon: Workflows for Mass-Spectrometry Based Non-Target Analysis

Find features using enviPick

Description

Uses the enviPickwrap function from the enviPick R package to extract features.

Usage

findFeaturesEnviPick(analysisInfo, ..., parallel = TRUE, verbose = TRUE)

Arguments

analysisInfo	A data.frame with Analysis information.
...	Further parameters passed to enviPickwrap.
parallel	If set to TRUE then code is executed in parallel through the futures package. Please see the parallelization section in the handbook for more details.
verbose	If set to FALSE then no text output is shown.

Details

This function uses enviPick to automatically find features. This function is called when calling findFeatures with algorithm="envipick".

The input MS data files need to be centroided. The convertMSFiles function can be used to centroid data.

Value

An object of a class which is derived from features.

Note

The analysis files must be in the mzXML format.

See Also

findFeatures for more details and other algorithms.

rickhelmus/patRoon documentation built on Nov. 22, 2024, 3:11 p.m.