Files in rickhelmus/patRoon
Workflow Solutions for Mass-Spectrometry Based Non-Target Analysis

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DESCRIPTION
Dockerfile
LICENSE
NAMESPACE
NEWS.md R/EIC-tool.R R/cache.R R/components-camera.R R/components-intclust.R R/components-nontarget.R R/components-ramclustr.R R/components.R R/compounds-cluster.R R/compounds-metfrag.R R/compounds-sirius.R R/compounds-util.R R/compounds.R R/feature_groups-bruker.R R/feature_groups-comparison.R R/feature_groups-envimass.R R/feature_groups-filter.R R/feature_groups-openms.R R/feature_groups-screening.R R/feature_groups-tasq.R R/feature_groups-xcms.R R/feature_groups.R R/features-bruker.R R/features-envipick.R R/features-feature_groups.R R/features-openms.R R/features-tasq.R R/features-xcms.R R/features.R R/formula-bruker.R R/formula-genform.R R/formula-utils.R R/formulas-sirius.R R/formulas.R R/generics.R R/main.R R/mspeaklists-bruker.R R/mspeaklists-mzr.R R/mspeaklists.R R/multi-process.R R/project-tool.R R/report.R R/utils-bruker.R R/utils-checkmate.R R/utils-mzr.R R/utils-sirius.R R/utils-xcms.R R/utils.R R/zzz.R README.md
TODO.txt
_pkgdown.yaml
appveyor.yml
checkmate.ods
docker/install_deps.R docker/run_tests.R
docs/LICENSE-text.html
docs/LICENSE.html
docs/README.html
docs/articles/index.html
docs/articles/tutorial.html
docs/articles/tutorial_files/figure-html/plotEIC-1.png
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docs/examples/report.html
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docs/jquery.sticky-kit.min.js
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docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/GUI-utils.html
docs/reference/MSPeakLists-class.html
docs/reference/MSPeakLists-generation.html
docs/reference/analysis-information.html
docs/reference/bruker-utils.html
docs/reference/clearCache.html
docs/reference/clusterInfo-class.html
docs/reference/component-generation.html
docs/reference/components-class.html
docs/reference/compound-generation.html
docs/reference/compounds-class.html
docs/reference/compounds-cluster.html
docs/reference/compoundsCluster-class.html
docs/reference/convertMSFiles.html
docs/reference/createCOMReference.html
docs/reference/feature-filtering.html
docs/reference/feature-finding.html
docs/reference/feature-grouping.html
docs/reference/featureGroups-class.html
docs/reference/featureGroups-compare.html
docs/reference/featureGroupsComparison-class.html
docs/reference/features-class.html
docs/reference/formula-generation.html
docs/reference/formulaConsensus-class.html
docs/reference/formulas-class.html
docs/reference/generics.html
docs/reference/getXcmsSet.html
docs/reference/h-cluster.html
docs/reference/index.html
docs/reference/patRoon-package.html
docs/reference/reporting.html
docs/reference/silhouetteInfo-class.html
docs/reference/target-screening.html
docs/sitemap.xml
inst/REFERENCES.bib
inst/js/utils-EIC.js
inst/js/utils-comp.js
inst/js/utils-report.js
inst/misc/genform.txt
inst/report/annotation.Rmd inst/report/components.Rmd inst/report/main.Rmd
inst/rstudio/addins.dcf
inst/templates/comp-cluster.Rmd inst/templates/comp-spectra.Rmd inst/templates/components-intclust.Rmd inst/templates/components-spectra.Rmd inst/templates/formula-spectra.Rmd inst/templates/main_script.R man-roxygen/analysisInfo-list.R man-roxygen/dynamictreecut.R man-roxygen/filterby.R man-roxygen/form-args.R man-roxygen/generic-algo.R man-roxygen/generics.R man-roxygen/multiProc-args.R man-roxygen/plotChord-args.R man-roxygen/plotSpec-args.R man-roxygen/plot_clust.R man-roxygen/plotvenn-ret.R man-roxygen/sirius-args.R man-roxygen/useGGplot2.R man/GUI-utils.Rd man/MSPeakLists-class.Rd man/MSPeakLists-generation.Rd man/analysis-information.Rd man/bruker-utils.Rd man/clearCache.Rd man/component-generation.Rd man/components-class.Rd man/componentsIntClust-class.Rd man/compound-generation.Rd man/compounds-class.Rd man/compounds-cluster.Rd man/compoundsCluster-class.Rd man/convertMSFiles.Rd man/createCOMReference.Rd man/feature-filtering.Rd man/feature-finding.Rd man/feature-grouping.Rd man/featureGroups-class.Rd man/featureGroups-compare.Rd man/featureGroupsComparison-class.Rd man/features-class.Rd
man/formula-generation.Rd
man/formulaConsensus-class.Rd man/formulas-class.Rd man/generics.Rd man/getXcmsSet.Rd
man/macros/macros.Rd
man/patRoon-package.Rd man/reporting.Rd man/target-screening.Rd
src/GenForm-svn/README
src/GenForm-svn/main.cpp
src/GenForm-svn/msaddion.cpp
src/GenForm-svn/msaddion.h
src/GenForm-svn/mschemelement.cpp
src/GenForm-svn/mschemelement.h
src/GenForm-svn/mscomparelr.cpp
src/GenForm-svn/mscomparelr.h
src/GenForm-svn/msconvert.cpp
src/GenForm-svn/msconvert.h
src/GenForm-svn/msdef.h
src/GenForm-svn/mselementinfo.h
src/GenForm-svn/mselementintervalmap.cpp
src/GenForm-svn/mselementintervalmap.h
src/GenForm-svn/mselementintervalmaputil.cpp
src/GenForm-svn/mselementintervalmaputil.h
src/GenForm-svn/mselementmultmap.cpp
src/GenForm-svn/mselementmultmap.h
src/GenForm-svn/mselementmultmapfilter.cpp
src/GenForm-svn/mselementmultmapfilter.h
src/GenForm-svn/mselementmultmaputil.cpp
src/GenForm-svn/mselementmultmaputil.h
src/GenForm-svn/msexception.h
src/GenForm-svn/msgenericinterval.h
src/GenForm-svn/msgenericmassintensmap.h
src/GenForm-svn/msgenformalgo.h
src/GenForm-svn/msgenformbymassalgo.h
src/GenForm-svn/msgenformbyspecalgo.cpp
src/GenForm-svn/msgenformbyspecalgo.h
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src/GenForm-svn/mshrmassintensmaputil.cpp
src/GenForm-svn/mshrmassintensmaputil.h
src/GenForm-svn/mshrmatchformula.cpp
src/GenForm-svn/mshrmatchformula.h
src/GenForm-svn/mshrmatchutils.cpp
src/GenForm-svn/mshrmatchutils.h
src/GenForm-svn/msisotope.cpp
src/GenForm-svn/msisotope.h
src/GenForm-svn/msknownelements.cpp
src/GenForm-svn/msknownelements.h
src/GenForm-svn/mslrmassintensmap.cpp
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tests/testthat/test_data/components-cam.Rds
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tests/testthat/test_data/ff-show-openms.txt
tests/testthat/test_data/ff-show-xcms.txt
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tests/testthat/test_data/fg-show-openms.txt
tests/testthat/test_data/fg-show-xcms.txt
tests/testthat/test_data/fg-xcms.Rds
tests/testthat/test_data/fgf-absabu.txt
tests/testthat/test_data/fgf-bl.txt
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tests/testthat/test_data/plists-mzr.Rds
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tests/testthat/test_data/screening-feat.Rds
tests/testthat/test_data/screening.Rds
tests/testthat/test_data/test-mf-db-isomers.csv
tests/testthat/test_data/test-mf-db.csv
utests.ods
vignettes/tutorial.Rmd
rickhelmus/patRoon documentation built on June 20, 2018, 10:41 p.m.