#' @param calcSims If set to \code{TRUE} then structural similarities between the parent and its TPs are calculated. A
#' minimum similarity can be obtained by using the \link[=filter,transformationProductsStructure-method]{filter
#' method}. May be useful under the assumption that parents and TPs who have a high structural similarity, also likely
#' have a high MS/MS spectral similarity (which can be evaluated after componentization with
#' \code{\link{generateComponentsTPs}}).
#'
#' @references \addCitations{rcdk}{1}
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