patRoon-deprecated: Deprecated and renamed functions.

In rickhelmus/patRoon: Workflows for Mass-Spectrometry Based Non-Target Analysis

Deprecated and renamed functions.

Description

Please do not use these functions anymore since they may be removed in the future.

Usage

reportMD(...)

exportDAFiles(
  anaInfo,
  format = "mzML",
  exportLine = TRUE,
  outPath = anaInfo$path,
  overWrite = FALSE
)

plotEIC(obj, ...)

groups(object, ...)

plotSpec(obj, ...)

formulaTable(...)

compoundTable(...)

Arguments

...	Passed to successor function.
format	The output format of exported files. Should be either "mzXML", "mzML" or "mzData".
exportLine	Export line spectra (TRUE) or profile spectra (FALSE). Usually line spectra are preferred, since profile spectra use signficantly more disk space and increase required memory during processing.
outPath	Character vector of output paths for exported analyses. Will be recycled if necessary.
overWrite	If TRUE existing files will be overwritten.

Details

reportMD performs HTML reporting, please use reportHTML instead.

exportDAFiles will export a set of analyses either in ‘.mzXML’ or ‘.mzML’ formats.

Please use plotChroms instead.

Please use groupTable instead.

Please use plotSpectrum instead.

Please use annotations instead.

Please use annotations instead.

rickhelmus/patRoon documentation built on April 25, 2024, 8:15 a.m.