findDMVS: The function find the DMVs defined by Xie et al in Cell 2013....
In ritianjiang/MethyAge2: A toolkit to analysis DNA methylation with age
Description
Usage
Arguments
Value
Description
The function find the DMVs defined by Xie et al in Cell 2013.
To identify each DMVs in a cell type, the genome was first divided in 1kb
bins and the DNA methylation level was averaged within each bin. Then a sliding
5kb window (with 1kb step) was used to identify regions that have an averaged
methylation level less than 0.15 in a 5kb window. Continuous regions resulting
from this analysis were then merged to form DMVs.
Usage
1
findDMVS(methyMatrix)
Arguments
methyMatrix:
A matrix contains the methylation ratios. Columns are
samples and rows are sites. Each rowname is like 'chrX.NNNNN'
Value
A dataframe shows the methylation of 5kb-1kbstep regions of each sample.
ritianjiang/MethyAge2 documentation built on Dec. 3, 2019, 2:03 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
The function find the DMVs defined by Xie et al in Cell 2013. To identify each DMVs in a cell type, the genome was first divided in 1kb bins and the DNA methylation level was averaged within each bin. Then a sliding 5kb window (with 1kb step) was used to identify regions that have an averaged methylation level less than 0.15 in a 5kb window. Continuous regions resulting from this analysis were then merged to form DMVs.
Usage
1 | findDMVS(methyMatrix)
|
Arguments
methyMatrix: |
A matrix contains the methylation ratios. Columns are samples and rows are sites. Each rowname is like 'chrX.NNNNN' |
Value
A dataframe shows the methylation of 5kb-1kbstep regions of each sample.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.