Description Usage Arguments Value Examples
Plot methylation status across genic regions(or some other features) and their up/down stream.
1 2 |
object: |
A GRanges object contains the methylsites |
grAnno: |
A TxDb object containing the features. Please provide the strand info if you are ploting |
numbin: |
bin number to split the feature regions we wanna plot |
wingbin: |
bin number of the up/down stream |
upstream: |
numeric; upstream bp to plot; default:2000 |
downstream: |
numeric; downstream bp to plot; default:500 |
scoreColumnName: |
character; The name of score in object. |
Strand: |
boolean; Wheather use the strand info of object. default: F. |
A dataframe which contains site location and annotation. In the dataframe, there won't be the metainfo like p-values etc.
1 2 | data(ExampleAnnotate)
result<-DMSAnnotate(methylDiff.obj, ExampleGencode)
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